The phylogenetic diversity of metagenomes
WebbComparative genomic analyses of metagenomes from a variety of environments by two-way clustering of samples and functional gene categories demonstrated that the 4143-1 metagenome clustered most closely with that from a carbonate chimney from Lost City. Webb26 jan. 2024 · Here, we used 3078 metagenomes to analyse the distribution of PHA depolymerases in microbial communities from diverse aquatic, terrestrial and waste management systems. We significantly expand the recognized diversity of this protein family by screening 1914 Gb of sequence data and identifying 13 869 putative PHA …
The phylogenetic diversity of metagenomes
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Webb1 apr. 2024 · This article increases the known phylogenetic diversity of bacteria and archaea by more than 40% in comparison with the available genomes in public repositories to date. This genomic catalog includes 2652 MAGs from 61 natural and managed soils, a number that exceeds by three times the information currently available in soil microbial … Webb1 apr. 2024 · This article increases the known phylogenetic diversity of bacteria and archaea by more than 40% in comparison with the available genomes in public …
Webb31 aug. 2011 · Phylogenetic diversity—patterns of phylogenetic relatedness among organisms in ecological communities—provides important insights into the mechanisms underlying community assembly. Studies that measure phylogenetic diversity in microbial communities have primarily been limited to a single marker gene approach, using the … Webb1 feb. 2010 · Assessment of phylogenetic diversity is a key element to the analysis of microbial communities. Tools are needed to handle next-generation sequencing data and to cope with the computational ...
Webb12 apr. 2024 · In this work, we combined matched metagenomic sequencing (856 metagenomes; 48 subjects ... between pangenomic distance (overall gene-level variation across both the core and accessory genome) and phylogenetic distance ... not all isolates of an ST had the same gene content. Generating accumulation curves to estimate … WebbPhylogenetic diversity estimates based on the SSU-rRNA gene and the multi-gene metagenomic phylogeny were broadly concordant, suggesting that our approach will be …
Webb24 apr. 2013 · We found a general agreement of the distribution of functional categories in the Zoo compost metagenomes compared with seven selected public metagenomes of biomass ... (2007) Molecular phylogenetic diversity of bacteria and its spatial distribution in composts. Journal of Applied Microbiology 103: 1344–1354. View Article
Webb13 okt. 2024 · Pangenomes offer detailed characterizations of core and accessory genes found in a set of closely related microbial genomes, generally by clustering genes based on sequence homology. In … raynor sc2Webb1 feb. 2024 · Here we present a snapshot of the phylogenetic and metabolic diversity of the prokaryotic microbiota dwelling in saline soils located in the Odiel saltmarshes … raynor school westhamptonWebbThe phylogenetic diversity of metagenomes (Q34017552) From Wikidata. Jump to navigation Jump to search. scientific article. edit. Language Label Description Also known as; English: The phylogenetic diversity of metagenomes. scientific article. simpli toolboxWebbThen, we constructed a comparative neighbour-joining phylogeny of both the neonatal cohorts and the other E. faecalis collection 20 from core distances estimated with PopPUNK 43 . raynor scheine net worthWebbphylogenetic diversity of microbial communities based on metagenomic data sets. We applied this method to understand patterns of microbial phylogenetic diversity and … raynor sectional doorsWebbAlthough the phylogenetic diversity of these microorganisms has been described previously, the adaptation and metabolic potential of the microbial communities is only … raynors bayportWebb1 feb. 2024 · Hypersaline environments encompass aquatic and terrestrial habitats. While only a limited number of studies on the microbial diversity of saline soils have been carried out, hypersaline lakes and marine salterns have been thoroughly investigated, resulting in an aquatic-biased knowledge about life in hypersaline environments. To improve our … raynor scheine movies with sally field